Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01820.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3466
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.34


Found at i:2659 original size:17 final size:18

Alignment explanation


    Indices: 2627--2661  Score: 54
    Period size: 17  Copynumber: 2.0  Consensus size: 18

       2617 TATGCACAAC

                              
       2627 ATGTTCCATCCAGTTTCA
          1 ATGTTCCATCCAGTTTCA

                     *        
       2645 ATGTTCCA-GCAGTTTCA
          1 ATGTTCCATCCAGTTTCA

       2662 GGTGCTGCTG


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  17    8  0.50
  18    8  0.50

ACGTcount: A:0.23, C:0.26, G:0.14, T:0.37


Consensus pattern (18 bp):   
ATGTTCCATCCAGTTTCA
Done.