Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00561.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2002
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.34


Found at i:1924 original size:16 final size:16

Alignment explanation


    Indices: 1903--1933  Score: 53
    Period size: 16  Copynumber: 1.9  Consensus size: 16

       1893 TGCCCTAGAT

                            
       1903 TTTTTTATTATTTTTA
          1 TTTTTTATTATTTTTA

                  *        
       1919 TTTTTTTTTATTTTT
          1 TTTTTTATTATTTTT

       1934 GGGAATTTAT


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  16   14  1.00

ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87


Consensus pattern (16 bp):   
TTTTTTATTATTTTTA
Done.