Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00567.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 644

Length: 1074
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.29


Found at i:233 original size:12 final size:12

Alignment explanation


    Indices: 189--236  Score: 51
    Period size: 12  Copynumber: 4.0  Consensus size: 12

        179 GAGCACAAGC

                     *  
        189 CCGACACCGTCA
          1 CCGACACCGGCA

              **    *   
        201 CCCTCACCAGCA
          1 CCGACACCGGCA

               *        
        213 CCGGCACCGGCA
          1 CCGACACCGGCA

                        
        225 CCGACACCGGCA
          1 CCGACACCGGCA

        237 TACACAAATA


Statistics
Matches: 28,  Mismatches: 8, Indels: 0
        0.78            0.22        0.00

Matches are distributed among these distances:
  12   28  1.00

ACGTcount: A:0.23, C:0.52, G:0.21, T:0.04


Consensus pattern (12 bp):   
CCGACACCGGCA
Done.