Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00604.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 509

Length: 849
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.27


Found at i:161 original size:12 final size:12

Alignment explanation


    Indices: 127--152  Score: 52
    Period size: 12  Copynumber: 2.2  Consensus size: 12

        117 TTCCCCAAGC

                        
        127 CTCTAACCACCG
          1 CTCTAACCACCG

                        
        139 CTCTAACCACCG
          1 CTCTAACCACCG

              
        151 CT
          1 CT

        153 TTAGCCACCA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   14  1.00

ACGTcount: A:0.23, C:0.50, G:0.08, T:0.19


Consensus pattern (12 bp):   
CTCTAACCACCG
Done.