Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00610.F9

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4233
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.31


Found at i:13 original size:2 final size:2

Alignment explanation


    Indices: 7--49  Score: 86
    Period size: 2  Copynumber: 21.5  Consensus size: 2

          1 GGAAGG

                                                                          
          7 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
          1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA

             
         49 G
          1 G

         50 CTCTTTGTTA


Statistics
Matches: 41,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   41  1.00

ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00


Consensus pattern (2 bp):   
GA

Found at i:4157 original size:35 final size:35

Alignment explanation


    Indices: 4111--4180  Score: 140
    Period size: 35  Copynumber: 2.0  Consensus size: 35

       4101 TAAGGTTACA

                                               
       4111 GCCTGTGGAAAATACTGGTATTTATTCAGGTATAT
          1 GCCTGTGGAAAATACTGGTATTTATTCAGGTATAT

                                               
       4146 GCCTGTGGAAAATACTGGTATTTATTCAGGTATAT
          1 GCCTGTGGAAAATACTGGTATTTATTCAGGTATAT

       4181 ACATACACAT


Statistics
Matches: 35,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  35   35  1.00

ACGTcount: A:0.29, C:0.11, G:0.23, T:0.37


Consensus pattern (35 bp):   
GCCTGTGGAAAATACTGGTATTTATTCAGGTATAT
Done.