Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01824.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3142
ACGTcount: A:0.27, C:0.16, G:0.23, T:0.34


Found at i:2077 original size:33 final size:33

Alignment explanation


    Indices: 2035--2101  Score: 134
    Period size: 33  Copynumber: 2.0  Consensus size: 33

       2025 AGTTATGCTC

                                             
       2035 TCATATAATTCTCCTCCTTGGAATTTGTTTTTA
          1 TCATATAATTCTCCTCCTTGGAATTTGTTTTTA

                                             
       2068 TCATATAATTCTCCTCCTTGGAATTTGTTTTTA
          1 TCATATAATTCTCCTCCTTGGAATTTGTTTTTA

             
       2101 T
          1 T

       2102 AAGTTGCTTG


Statistics
Matches: 34,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  33   34  1.00

ACGTcount: A:0.21, C:0.18, G:0.09, T:0.52


Consensus pattern (33 bp):   
TCATATAATTCTCCTCCTTGGAATTTGTTTTTA

Done.