Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00619.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6622
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30


Found at i:1825 original size:17 final size:17

Alignment explanation


    Indices: 1803--1835  Score: 66
    Period size: 17  Copynumber: 1.9  Consensus size: 17

       1793 CCCACTTTAA

                             
       1803 CCAAACTAATAACTTAG
          1 CCAAACTAATAACTTAG

                            
       1820 CCAAACTAATAACTTA
          1 CCAAACTAATAACTTA

       1836 ACCACTTTAA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   16  1.00

ACGTcount: A:0.48, C:0.24, G:0.03, T:0.24


Consensus pattern (17 bp):   
CCAAACTAATAACTTAG
Done.