Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00621.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 901

Length: 1503
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30


Found at i:139 original size:2 final size:2

Alignment explanation


    Indices: 132--176  Score: 90
    Period size: 2  Copynumber: 22.5  Consensus size: 2

        122 TGCTAGTGAC

                                                                          
        132 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
          1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA

                
        174 GA G
          1 GA G

        177 TGACGGAGAA


Statistics
Matches: 43,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   43  1.00

ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00


Consensus pattern (2 bp):   
GA

Done.