Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00626.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4755
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.30


Found at i:4531 original size:130 final size:130

Alignment explanation


    Indices: 4344--4610  Score: 473
    Period size: 130  Copynumber: 2.1  Consensus size: 130

       4334 TCAGTTGTTA

                                                                             
       4344 CAAAA-GCAAGATAAGAATACAAAGGTTTTGGCAGCCAACAACTCCAATAGAACAAGATACACTT
          1 CAAAAGGCAAGATAAGAATACAAAGGTTTTGGCAGCCAACAACTCCAATAGAACAAGATACACTT

                *    *                                                       
       4408 TTAATCCTTGACTTCCTAGCAACAAATACTAAGGTTTGAACCTCCTTTCTTCAGTTGAAACGGAT
         66 TTAAGCCTTAACTTCCTAGCAACAAATACTAAGGTTTGAACCTCCTTTCTTCAGTTGAAACGGAT

                                                 *                           
       4473 CAAAAGGCAAGATAAGAATACAAAGGTTTTGGCAGCCCACAACTCCAATAGAACAAGATACACTT
          1 CAAAAGGCAAGATAAGAATACAAAGGTTTTGGCAGCCAACAACTCCAATAGAACAAGATACACTT

                                    *                *                       
       4538 TTAAGCCTTAACTTCCTAGCAACATATACTAAGGTTTGAACGTCCTTTCTTCAGTTGAAACGGAT
         66 TTAAGCCTTAACTTCCTAGCAACAAATACTAAGGTTTGAACCTCCTTTCTTCAGTTGAAACGGAT

             *      
       4603 CGAAAGGC
          1 CAAAAGGC

       4611 GGCTTTCTCT


Statistics
Matches: 131,  Mismatches: 6, Indels: 1
        0.95            0.04        0.01

Matches are distributed among these distances:
 129    5  0.04
 130  126  0.96

ACGTcount: A:0.37, C:0.22, G:0.16, T:0.25


Consensus pattern (130 bp):   
CAAAAGGCAAGATAAGAATACAAAGGTTTTGGCAGCCAACAACTCCAATAGAACAAGATACACTT
TTAAGCCTTAACTTCCTAGCAACAAATACTAAGGTTTGAACCTCCTTTCTTCAGTTGAAACGGAT
Done.