Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00630.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2076
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29


Found at i:1582 original size:46 final size:46

Alignment explanation


    Indices: 1529--1621  Score: 186
    Period size: 46  Copynumber: 2.0  Consensus size: 46

       1519 GAGGGGCACG

                                                          
       1529 TGTGTCTGTGCCGCATCATGCCCTTCCTTGACTGGTGGCTGCACTA
          1 TGTGTCTGTGCCGCATCATGCCCTTCCTTGACTGGTGGCTGCACTA

                                                          
       1575 TGTGTCTGTGCCGCATCATGCCCTTCCTTGACTGGTGGCTGCACTA
          1 TGTGTCTGTGCCGCATCATGCCCTTCCTTGACTGGTGGCTGCACTA

             
       1621 T
          1 T

       1622 CTCAACAACA


Statistics
Matches: 47,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  46   47  1.00

ACGTcount: A:0.11, C:0.30, G:0.26, T:0.33


Consensus pattern (46 bp):   
TGTGTCTGTGCCGCATCATGCCCTTCCTTGACTGGTGGCTGCACTA
Done.