Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00643.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 807

Length: 1345
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33


Found at i:1215 original size:15 final size:15

Alignment explanation


    Indices: 1195--1224  Score: 51
    Period size: 15  Copynumber: 2.0  Consensus size: 15

       1185 CATTTTATTT

                  *        
       1195 ATATTAGGATAATTA
          1 ATATTAAGATAATTA

                           
       1210 ATATTAAGATAATTA
          1 ATATTAAGATAATTA

       1225 TTAGGATTAT


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40


Consensus pattern (15 bp):   
ATATTAAGATAATTA

Found at i:1252 original size:27 final size:26

Alignment explanation


    Indices: 1191--1253  Score: 63
    Period size: 27  Copynumber: 2.3  Consensus size: 26

       1181 ACTCCATTTT

                                       
       1191 ATTTATATTAGGATAATTAATATTAAG
          1 ATTT-TATTAGGATAATTAATATTAAG

               *            *     *   * 
       1218 ATAATTATTAGGATTATTTAATTTTAGG
          1 AT-TTTATTAGGA-TAATTAATATTAAG

                    
       1246 ATTTTATT
          1 ATTTTATT

       1254 TTAATTATCT


Statistics
Matches: 29,  Mismatches: 5, Indels: 4
        0.76            0.13        0.11

Matches are distributed among these distances:
  27   15  0.52
  28   14  0.48

ACGTcount: A:0.38, C:0.00, G:0.11, T:0.51


Consensus pattern (26 bp):   
ATTTTATTAGGATAATTAATATTAAG
Done.