Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00653.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3786
ACGTcount: A:0.34, C:0.14, G:0.20, T:0.33


Found at i:3478 original size:16 final size:16

Alignment explanation


    Indices: 3457--3489  Score: 66
    Period size: 16  Copynumber: 2.1  Consensus size: 16

       3447 TTTATAGTAA

                            
       3457 ATCAGAAGCTCGTTGG
          1 ATCAGAAGCTCGTTGG

                            
       3473 ATCAGAAGCTCGTTGG
          1 ATCAGAAGCTCGTTGG

             
       3489 A
          1 A

       3490 GATCACTCAC


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   17  1.00

ACGTcount: A:0.27, C:0.18, G:0.30, T:0.24


Consensus pattern (16 bp):   
ATCAGAAGCTCGTTGG
Done.