Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00682.P3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5509
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34


Found at i:2059 original size:16 final size:16

Alignment explanation


    Indices: 2013--2065  Score: 52
    Period size: 16  Copynumber: 3.2  Consensus size: 16

       2003 CTTTTCTGGA

                   * *      
       2013 AGAACAACTCTTGTTT
          1 AGAACAATTATTGTTT

                * *   *     
       2029 AGAATAGTTACTGTTT
          1 AGAACAATTATTGTTT

                            
       2045 AGAACAATTATTGTTT
          1 AGAACAATTATTGTTT

                 
       2061 GAGAA
          1 -AGAA

       2066 TCTAAATTTG


Statistics
Matches: 28,  Mismatches: 8, Indels: 1
        0.76            0.22        0.03

Matches are distributed among these distances:
  16   24  0.86
  17    4  0.14

ACGTcount: A:0.36, C:0.09, G:0.17, T:0.38


Consensus pattern (16 bp):   
AGAACAATTATTGTTT
Done.