Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga08g00687.N1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 847
Length: 1413
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Found at i:1172 original size:173 final size:173
Alignment explanation
Indices: 883--1230 Score: 687
Period size: 173 Copynumber: 2.0 Consensus size: 173
873 TGAAGATGAG
883 GTTGAGATCAAATTTATGGGACAACCAGTAGTACCCACATTGCAGTTGTACAATTTAGTCCATCT
1 GTTGAGATCAAATTTATGGGACAACCAGTAGTACCCACATTGCAGTTGTACAATTTAGTCCATCT
*
948 GTGGCTGCAAAAGGCATCAACATCACAGAGAGTTCCAGCATCTGTTGGTTCTTCTGCAAAGGATT
66 GTGGCTGCAAAAAGCATCAACATCACAGAGAGTTCCAGCATCTGTTGGTTCTTCTGCAAAGGATT
1013 TTATCATGGTGTTGGCATATGCTCGAAAAGCCCCACAGCAATA
131 TTATCATGGTGTTGGCATATGCTCGAAAAGCCCCACAGCAATA
1056 GTTGAGATCAAATTTATGGGACAACCAGTAGTACCCACATTGCAGTTGTACAATTTAGTCCATCT
1 GTTGAGATCAAATTTATGGGACAACCAGTAGTACCCACATTGCAGTTGTACAATTTAGTCCATCT
1121 GTGGCTGCAAAAAGCATCAACATCACAGAGAGTTCCAGCATCTGTTGGTTCTTCTGCAAAGGATT
66 GTGGCTGCAAAAAGCATCAACATCACAGAGAGTTCCAGCATCTGTTGGTTCTTCTGCAAAGGATT
1186 TTATCATGGTGTTGGCATATGCTCGAAAAGCCCCACAGCAATA
131 TTATCATGGTGTTGGCATATGCTCGAAAAGCCCCACAGCAATA
1229 GT
1 GT
1231 AATGCTTTCT
Statistics
Matches: 174, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
173 174 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (173 bp):
GTTGAGATCAAATTTATGGGACAACCAGTAGTACCCACATTGCAGTTGTACAATTTAGTCCATCT
GTGGCTGCAAAAAGCATCAACATCACAGAGAGTTCCAGCATCTGTTGGTTCTTCTGCAAAGGATT
TTATCATGGTGTTGGCATATGCTCGAAAAGCCCCACAGCAATA
Done.