Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00694.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3434
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.39


Found at i:428 original size:26 final size:26

Alignment explanation


    Indices: 392--445  Score: 108
    Period size: 26  Copynumber: 2.1  Consensus size: 26

        382 TTATCCCAAA

                                      
        392 TAGACACGCTATTTCCTTCATTGTAT
          1 TAGACACGCTATTTCCTTCATTGTAT

                                      
        418 TAGACACGCTATTTCCTTCATTGTAT
          1 TAGACACGCTATTTCCTTCATTGTAT

              
        444 TA
          1 TA

        446 CACGGTAATG


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  26   28  1.00

ACGTcount: A:0.24, C:0.22, G:0.11, T:0.43


Consensus pattern (26 bp):   
TAGACACGCTATTTCCTTCATTGTAT

Found at i:842 original size:157 final size:158

Alignment explanation


    Indices: 555--869  Score: 535
    Period size: 157  Copynumber: 2.0  Consensus size: 158

        545 AGATAGATGG

                       *                                                     
        555 GGATTAGATGCTAGTTCAACCTGATACCCATATTTCTTTTATGGATATAATGTTTAAAGTTCAAC
          1 GGATTAGATGCCAGTTCAACCTGATACCCATATTTCTTTTATGGATATAATGTTTAAAGTTCAAC

                    *                                                        
        620 TATGACCATATAACTTCATTTCTAGTGAAATTGTTTAAGCAATTGTGCCTTTGTATAAATTGTTA
         66 TATGACCACATAACTTCATTTCTAGTGAAATTGTTTAAGCAATTGTGCCTTTGTATAAATTGTTA

                                 *      
        685 AAATTCTGTTAAATGTACGGGTTAAACA
        131 AAATTCTGTTAAATGTACGGGCTAAACA

                            *      *    *                                    
        713 GGATTAGATGCCAGTTTAACCTGTTACCTATATTTCTTTTATGGATATAAT-TCTTAAAGTTCAA
          1 GGATTAGATGCCAGTTCAACCTGATACCCATATTTCTTTTATGGATATAATGT-TTAAAGTTCAA

                                  *                          *               
        777 CTA-GACCACATAACTTCATTTTTAGTGAAATTGTTTAAGCAATTGTGCTTTTGTATAAATTGTT
         65 CTATGACCACATAACTTCATTTCTAGTGAAATTGTTTAAGCAATTGTGCCTTTGTATAAATTGTT

                                         
        841 AAAATTCTGTTAAATGTACGGGCTAAACA
        130 AAAATTCTGTTAAATGTACGGGCTAAACA

        870 TGGTTCTGCT


Statistics
Matches: 148,  Mismatches: 8, Indels: 3
        0.93            0.05        0.02

Matches are distributed among these distances:
 157   87  0.59
 158   61  0.41

ACGTcount: A:0.32, C:0.13, G:0.15, T:0.40


Consensus pattern (158 bp):   
GGATTAGATGCCAGTTCAACCTGATACCCATATTTCTTTTATGGATATAATGTTTAAAGTTCAAC
TATGACCACATAACTTCATTTCTAGTGAAATTGTTTAAGCAATTGTGCCTTTGTATAAATTGTTA
AAATTCTGTTAAATGTACGGGCTAAACA
Done.