Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00695.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 888

Length: 1480
ACGTcount: A:0.35, C:0.12, G:0.19, T:0.33


Found at i:694 original size:24 final size:24

Alignment explanation


    Indices: 667--715  Score: 98
    Period size: 24  Copynumber: 2.0  Consensus size: 24

        657 CAAAAAATAG

                                    
        667 ATACCAAATATGTACAAGTGGTCA
          1 ATACCAAATATGTACAAGTGGTCA

                                    
        691 ATACCAAATATGTACAAGTGGTCA
          1 ATACCAAATATGTACAAGTGGTCA

             
        715 A
          1 A

        716 GTGTAGGGGC


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   25  1.00

ACGTcount: A:0.43, C:0.16, G:0.16, T:0.24


Consensus pattern (24 bp):   
ATACCAAATATGTACAAGTGGTCA
Done.