Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00701.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3269
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.34


Found at i:1424 original size:6 final size:6

Alignment explanation


    Indices: 1413--1445  Score: 66
    Period size: 6  Copynumber: 5.5  Consensus size: 6

       1403 TCGAATCACG

                                                  
       1413 CCTTCA CCTTCA CCTTCA CCTTCA CCTTCA CCT
          1 CCTTCA CCTTCA CCTTCA CCTTCA CCTTCA CCT

       1446 ACTCCAACAT


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   27  1.00

ACGTcount: A:0.15, C:0.52, G:0.00, T:0.33


Consensus pattern (6 bp):   
CCTTCA

Done.