Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00729.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1962
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.32


Found at i:229 original size:47 final size:47

Alignment explanation


    Indices: 176--269  Score: 188
    Period size: 47  Copynumber: 2.0  Consensus size: 47

        166 CTAATGGGAC

                                                           
        176 GTACTAGGACTTTCTTTCTTCCTTTTTAATGAGACTGGATAAATAGA
          1 GTACTAGGACTTTCTTTCTTCCTTTTTAATGAGACTGGATAAATAGA

                                                           
        223 GTACTAGGACTTTCTTTCTTCCTTTTTAATGAGACTGGATAAATAGA
          1 GTACTAGGACTTTCTTTCTTCCTTTTTAATGAGACTGGATAAATAGA

        270 TGCTCCATTT


Statistics
Matches: 47,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  47   47  1.00

ACGTcount: A:0.28, C:0.15, G:0.17, T:0.40


Consensus pattern (47 bp):   
GTACTAGGACTTTCTTTCTTCCTTTTTAATGAGACTGGATAAATAGA
Done.