Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00735.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3001
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.28


Found at i:467 original size:162 final size:162

Alignment explanation


    Indices: 299--1954  Score: 2738
    Period size: 162  Copynumber: 10.2  Consensus size: 162

        289 CTTACATTTT

                   *       *     *  *       *                                
        299 ACGCCTTCAGAGCAAATACAAACCAGGTTATGTAGTGGATGGAGCAGAGGAAAAGAGTTCTTCCT
          1 ACGCCTTGAGAGCAAGTACAAGCCGGGTTATGGAGTGGATGGAGCAGAGGAAAAGAGTTCTTCCT

             *                                              *                
        364 CGTCTTCTTACATTTCACGTCTTGAAAGCAAATACAAGCCGGGTTATGTAGTGGATGAAGTAGAG
         66 CATCTTCTTACATTTCACGTCTTGAAAGCAAATACAAGCCGGGTTATGGAGTGGATGAAGTAGAG

                                   * *      
        429 GAAAAGAATTCTTCTCCCTCATCGCATATTGC
        131 GAAAAGAATTCTTCTCCCTCATCTCGTATTGC

                           *     *  *       *           *    *               
        461 ACGCCTTGAGAGCAAATACAAACCCGGTTATGTAGTGGATGGAGTAGAGAAAAAGAGTTCTTCCT
          1 ACGCCTTGAGAGCAAGTACAAGCCGGGTTATGGAGTGGATGGAGCAGAGGAAAAGAGTTCTTCCT

                                                  *         *                
        526 CATCTTCTTACATTTCACGTCTTGAAAGCAAATACAAGTCGGGTTATGTAGTGGATGAAGTAGAG
         66 CATCTTCTTACATTTCACGTCTTGAAAGCAAATACAAGCCGGGTTATGGAGTGGATGAAGTAGAG

                                            
        591 GAAAAGAATTCTTCTCCCTCATCTCGTATTGC
        131 GAAAAGAATTCTTCTCCCTCATCTCGTATTGC

              *         *  *                 *                               
        623 ACTCCTTGAGAGAAAATACAAAGCC-GGTTATGTAGTGGATGGAGCAGAGGAAAAGAGTTCTTCC
          1 ACGCCTTGAGAGCAAGTAC-AAGCCGGGTTATGGAGTGGATGGAGCAGAGGAAAAGAGTTCTTCC

                       *                             **    * *               
        687 TCATCTTCTTATATTTCACGTCTTGAAAGCAAATACAAGCCAAGTTACGTAGTGGATGAAGTAGA
         65 TCATCTTCTTACATTTCACGTCTTGAAAGCAAATACAAGCCGGGTTATGGAGTGGATGAAGTAGA

                                             
        752 GGAAAAGAATTCTTCTCCCTCATCTCGTATTGC
        130 GGAAAAGAATTCTTCTCCCTCATCTCGTATTGC

                                 *  **      *                                
        785 ACGCCTTGAGAGCAAGTACAAACCCAGTTATGTAGTGGATGGAGCAGAGGAAAAGAGTTCTTCCT
          1 ACGCCTTGAGAGCAAGTACAAGCCGGGTTATGGAGTGGATGGAGCAGAGGAAAAGAGTTCTTCCT

            *                                       *     * *                
        850 TATCTTCTTACATTTCACGTCTTGAAAGCAAATACAAGCCAGGTTACGTAGTGGATGAAGTAGAG
         66 CATCTTCTTACATTTCACGTCTTGAAAGCAAATACAAGCCGGGTTATGGAGTGGATGAAGTAGAG

                                            
        915 GAAAAGAATTCTTCTCCCTCATCTCGTATTGC
        131 GAAAAGAATTCTTCTCCCTCATCTCGTATTGC

                                    ** *   *                                 
        947 ACGCCTTGAGAGCAAGTACAAGCCAAGCTATAGAGTGGATGGAGCAGAGGAAAAGAGTTCTTCCT
          1 ACGCCTTGAGAGCAAGTACAAGCCGGGTTATGGAGTGGATGGAGCAGAGGAAAAGAGTTCTTCCT

                           *                                          *   *  
       1012 CATCTTCTTACATTTTACGTCTTGAAAGCAAATACAAGCCGGGTTATGGAGTGGATGAGGTAAAG
         66 CATCTTCTTACATTTCACGTCTTGAAAGCAAATACAAGCCGGGTTATGGAGTGGATGAAGTAGAG

               *            *               
       1077 GAAGAGAATTCTTCTCTCTCATCTCGTATTGC
        131 GAAAAGAATTCTTCTCCCTCATCTCGTATTGC

                   *        *                           *                    
       1109 ACGCCTTAAGAGCAAGCACAAGCCGGGTTATGGAGTGGATGGAGTAGAGGAAAAGAGTTCTTCCT
          1 ACGCCTTGAGAGCAAGTACAAGCCGGGTTATGGAGTGGATGGAGCAGAGGAAAAGAGTTCTTCCT

                              *                                              
       1174 CATCTTCTTACATTTCACATCTTGAAAGCAAATACAAGCCGGGTTATGGAGTGGATGAAGTAGAG
         66 CATCTTCTTACATTTCACGTCTTGAAAGCAAATACAAGCCGGGTTATGGAGTGGATGAAGTAGAG

               *                            
       1239 GAAGAGAATTCTTCTCCCTCATCTCGTATTGC
        131 GAAAAGAATTCTTCTCCCTCATCTCGTATTGC

                *                                                            
       1271 ACGCATTGAGAGCAAGTACAAGCCGGGTTATGGAGTGGATGGAGCAGAGGAAAAGAGTTCTTCCT
          1 ACGCCTTGAGAGCAAGTACAAGCCGGGTTATGGAGTGGATGGAGCAGAGGAAAAGAGTTCTTCCT

                            *                                                
       1336 CATCTTCTTACATTTCGCGTCTTGAAAGCAAATACAAGCCGGGTTATGGAGTGGATGAAGTAGAG
         66 CATCTTCTTACATTTCACGTCTTGAAAGCAAATACAAGCCGGGTTATGGAGTGGATGAAGTAGAG

                                     *      
       1401 GAAAAGAATTCTTCTCCCTCATCTCATATTGC
        131 GAAAAGAATTCTTCTCCCTCATCTCGTATTGC

                                   *                *                        
       1433 ACGCCTTGAGAGCAAGTACAAGCGGGGTTATGGAGTGGATAGAGCAGAGGAAAAGAGTTCTTCCT
          1 ACGCCTTGAGAGCAAGTACAAGCCGGGTTATGGAGTGGATGGAGCAGAGGAAAAGAGTTCTTCCT

                                                     *                       
       1498 CATCTTCTTACATTTCACGTCTTGAAAGCAAATACAAGCCGAGTTATGGAGTGGATGAAGTAGAG
         66 CATCTTCTTACATTTCACGTCTTGAAAGCAAATACAAGCCGGGTTATGGAGTGGATGAAGTAGAG

                                      *     
       1563 GAAAAGAATTCTTCTCCCTCATCTCGCATTGC
        131 GAAAAGAATTCTTCTCCCTCATCTCGTATTGC

             *                                                               
       1595 AAGCCTTGAGAGCAAGTACAAGCCGGGTTATGGAGTGGATGGAGCAGAGGAAAAGAGTTCTTCCT
          1 ACGCCTTGAGAGCAAGTACAAGCCGGGTTATGGAGTGGATGGAGCAGAGGAAAAGAGTTCTTCCT

                                                     *                       
       1660 CATCTTCTTACATTTCACGTCTTGAAAGCAAATACAAGCCGAGTTATGGAGTGGATGAAGTAGAG
         66 CATCTTCTTACATTTCACGTCTTGAAAGCAAATACAAGCCGGGTTATGGAGTGGATGAAGTAGAG

                                            
       1725 GAAAAGAATTCTTCTCCCTCATCTCGTATTGC
        131 GAAAAGAATTCTTCTCCCTCATCTCGTATTGC

             *                                                               
       1757 AAGCCTTGAGAGCAAGTACAAGCCGGGTTATGGAGTGGATGGAGCAGAGGAAAAGAGTTCTTCCT
          1 ACGCCTTGAGAGCAAGTACAAGCCGGGTTATGGAGTGGATGGAGCAGAGGAAAAGAGTTCTTCCT

                                                                             
       1822 CATCTTCTTACATTTCACGTCTTGAAAGCAAATACAAGCCGGGTTATGGAGTGGATGAAGTAGAG
         66 CATCTTCTTACATTTCACGTCTTGAAAGCAAATACAAGCCGGGTTATGGAGTGGATGAAGTAGAG

                                            
       1887 GAAAAGAATTCTTCTCCCTCATCTCGTATTGC
        131 GAAAAGAATTCTTCTCCCTCATCTCGTATTGC

                     *     *  *    *            
       1919 ACGCCTTGAAAGCAAATATAAGCTGGGTTATGGAGT
          1 ACGCCTTGAGAGCAAGTACAAGCCGGGTTATGGAGT

       1955 TGACAAAGAT


Statistics
Matches: 1415,  Mismatches: 77, Indels: 4
        0.95            0.05        0.00

Matches are distributed among these distances:
 161    4  0.00
 162  1407  0.99
 163    4  0.00

ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27


Consensus pattern (162 bp):   
ACGCCTTGAGAGCAAGTACAAGCCGGGTTATGGAGTGGATGGAGCAGAGGAAAAGAGTTCTTCCT
CATCTTCTTACATTTCACGTCTTGAAAGCAAATACAAGCCGGGTTATGGAGTGGATGAAGTAGAG
GAAAAGAATTCTTCTCCCTCATCTCGTATTGC

Done.