Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00736.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5322
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.26


Found at i:730 original size:18 final size:18

Alignment explanation


    Indices: 703--744  Score: 75
    Period size: 18  Copynumber: 2.3  Consensus size: 18

        693 GATGTGCAGA

                 *            
        703 GAAAGGTGGGTAAGATGG
          1 GAAAGCTGGGTAAGATGG

                              
        721 GAAAGCTGGGTAAGATGG
          1 GAAAGCTGGGTAAGATGG

                  
        739 GAAAGC
          1 GAAAGC

        745 GTAAGCGTGG


Statistics
Matches: 23,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  18   23  1.00

ACGTcount: A:0.36, C:0.05, G:0.45, T:0.14


Consensus pattern (18 bp):   
GAAAGCTGGGTAAGATGG

Found at i:898 original size:99 final size:99

Alignment explanation


    Indices: 727--1170  Score: 789
    Period size: 99  Copynumber: 4.5  Consensus size: 99

        717 ATGGGAAAGC

                            *                           *                    
        727 TGGGTAAGATGGGAAAGCGTAAGCGTGGGAGACCGCCCAAGTTGGTGGATAAGGGGAATGATCAG
          1 TGGGTAAGATGGGAAAACGTAAGCGTGGGAGACCGCCCAAGTTGCTGGATAAGGGGAATGATCAG

                                              
        792 TCTCATAGTGAAGTGAAGGATGTGCAGAGTAAGG
         66 TCTCATAGTGAAGTGAAGGATGTGCAGAGTAAGG

                                                                             
        826 TGGGTAAGATGGGAAAACGTAAGCGTGGGAGACCGCCCAAGTTGCTGGATAAGGGGAATGATCAG
          1 TGGGTAAGATGGGAAAACGTAAGCGTGGGAGACCGCCCAAGTTGCTGGATAAGGGGAATGATCAG

                                              
        891 TCTCATAGTGAAGTGAAGGATGTGCAGAGTAAGG
         66 TCTCATAGTGAAGTGAAGGATGTGCAGAGTAAGG

                *     *                                                      
        925 TGGGAAAGATAGGAAAACGTAAGCGTGGGAGACCGCCCAAGTTGCTGGATAAGGGGAATGATCAG
          1 TGGGTAAGATGGGAAAACGTAAGCGTGGGAGACCGCCCAAGTTGCTGGATAAGGGGAATGATCAG

                  *  *                        
        990 TCTCATGGTAAAGTGAAGGATGTGCAGAGTAAGG
         66 TCTCATAGTGAAGTGAAGGATGTGCAGAGTAAGG

                                                               *             
       1024 TGGGTAAGATGGGAAAACGTAAGCGTGGGAGACCGCCCAAGTTGCTGGATATGGGGAATGATCAG
          1 TGGGTAAGATGGGAAAACGTAAGCGTGGGAGACCGCCCAAGTTGCTGGATAAGGGGAATGATCAG

                                              
       1089 TCTCATAGTGAAGTGAAGGATGTGCAGAGTAAGG
         66 TCTCATAGTGAAGTGAAGGATGTGCAGAGTAAGG

                             * *              *        *    
       1123 TGGGTAAGATGGGAAAATGCAAGCGTGGGAGACCACCCAAGTTTCTGG
          1 TGGGTAAGATGGGAAAACGTAAGCGTGGGAGACCGCCCAAGTTGCTGG

       1171 TGAAGAATGG


Statistics
Matches: 330,  Mismatches: 15, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  99  330  1.00

ACGTcount: A:0.31, C:0.12, G:0.37, T:0.19


Consensus pattern (99 bp):   
TGGGTAAGATGGGAAAACGTAAGCGTGGGAGACCGCCCAAGTTGCTGGATAAGGGGAATGATCAG
TCTCATAGTGAAGTGAAGGATGTGCAGAGTAAGG

Done.