Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00740.F6

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3701
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28


Found at i:622 original size:30 final size:32

Alignment explanation


    Indices: 588--650  Score: 94
    Period size: 33  Copynumber: 2.0  Consensus size: 32

        578 AGGAAGAGAA

                                            
        588 AGGATA-GG-GAAGAAGGGGAAGGAGGAGGAG
          1 AGGATAGGGAGAAGAAGGGGAAGGAGGAGGAG

                                 *           
        618 AGGATAGGGAAGAAGAAGGGGGAGGAGGAGGAG
          1 AGGATAGGG-AGAAGAAGGGGAAGGAGGAGGAG

        651 GAGAGTTGAG


Statistics
Matches: 29,  Mismatches: 1, Indels: 3
        0.88            0.03        0.09

Matches are distributed among these distances:
  30    6  0.21
  31    2  0.07
  33   21  0.72

ACGTcount: A:0.40, C:0.00, G:0.57, T:0.03


Consensus pattern (32 bp):   
AGGATAGGGAGAAGAAGGGGAAGGAGGAGGAG

Found at i:2066 original size:13 final size:13

Alignment explanation


    Indices: 2048--2073  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

       2038 CTGTTCGTAC

                         
       2048 TGCAGTTTACTTG
          1 TGCAGTTTACTTG

                         
       2061 TGCAGTTTACTTG
          1 TGCAGTTTACTTG

       2074 CTGAATATTT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.15, C:0.15, G:0.23, T:0.46


Consensus pattern (13 bp):   
TGCAGTTTACTTG
Done.