Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00740.F7

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1680
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25


Found at i:622 original size:30 final size:32

Alignment explanation


    Indices: 588--650  Score: 94
    Period size: 33  Copynumber: 2.0  Consensus size: 32

        578 AGGAAGAGAA

                                            
        588 AGGATA-GG-GAAGAAGGGGAAGGAGGAGGAG
          1 AGGATAGGGAGAAGAAGGGGAAGGAGGAGGAG

                                 *           
        618 AGGATAGGGAAGAAGAAGGGGGAGGAGGAGGAG
          1 AGGATAGGG-AGAAGAAGGGGAAGGAGGAGGAG

        651 GAGAGTTGAG


Statistics
Matches: 29,  Mismatches: 1, Indels: 3
        0.88            0.03        0.09

Matches are distributed among these distances:
  30    6  0.21
  31    2  0.07
  33   21  0.72

ACGTcount: A:0.40, C:0.00, G:0.57, T:0.03


Consensus pattern (32 bp):   
AGGATAGGGAGAAGAAGGGGAAGGAGGAGGAG
Done.