Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00744.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 776

Length: 1294
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.31


Found at i:256 original size:10 final size:10

Alignment explanation


    Indices: 241--274  Score: 50
    Period size: 10  Copynumber: 3.4  Consensus size: 10

        231 GAGCAGACAC

                    * 
        241 AGAGACAGGG
          1 AGAGACAGAG

                      
        251 AGAGACAGAG
          1 AGAGACAGAG

                 *    
        261 AGAGAGAGAG
          1 AGAGACAGAG

                
        271 AGAG
          1 AGAG

        275 GTGTAGGGGA


Statistics
Matches: 22,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  10   22  1.00

ACGTcount: A:0.47, C:0.06, G:0.47, T:0.00


Consensus pattern (10 bp):   
AGAGACAGAG
Done.