Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00761.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 745

Length: 1242
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.33


Found at i:959 original size:180 final size:177

Alignment explanation


    Indices: 652--1101  Score: 492
    Period size: 176  Copynumber: 2.5  Consensus size: 177

        642 AGGGAAATAG

                             *      *         *                 *  ** *      
        652 ATCTTCAA-TCTTCAGTTTACTTCTTTGCTACCTTAGGAAGATAAGACTACAATCGCCGACCTGC
          1 ATCTTCAATTCTT-AGTCTACTTCCTTGCTACCTCAGGAAGATAAGACT-CATTCTTCAACCTGC

                             *   *                      *       *            
        716 TCTCTTGCTACCTCAGAAAGACAAGG-TTAGTGGTAAAAATCTGTTCCATCGTCAATACATGGAG
         64 TCTCTTGCTACCTCAGAGAGATAAGGCTTAGTGGTAAAAATCTGCTCCATCGCCAATACATGGAG

                      **                   *  *                  
        780 ATAAGATTCATTATCTACGAAGATCTACTCCTTTGCAACTTCAGGGAGATAAA
        129 ATAAGATTCACCAT-T-CGAA-ATCTACTCCGTTAC-ACTTCAGGGAGATAAA

                              *                     *   *                    
        833 ATCTTCAATTCTTAGTCTGCTTCCTTGCTACCTCAGGAAGGTAAAACTCATTCTTCAACCTGCTC
          1 ATCTTCAATTCTTAGTCTACTTCCTTGCTACCTCAGGAAGATAAGACTCATTCTTCAACCTGCTC

                     *                 *           *        *   *            
        898 TCTTGCTACGTCAGAGAGATAAGGCTTGGTGGT-AAAATTTGCTCCATTGCCGATACATGGAGAT
         66 TCTTGCTACCTCAGAGAGATAAGGCTTAGTGGTAAAAATCTGCTCCATCGCCAATACATGGAGAT

                         ***     *         **  *           
        962 AAGATTCACCATTTTTAATCTGCTCCGTTACTGTTTAGGGAGATAAA
        131 AAGATTCACCATTCGAAATCTACTCCGTTACACTTCAGGGAGATAAA

              *  *      *                 *   *                 *            
       1009 ATATTTAATTCTCAGTCTACTTCCTTGCTATCTCTGGAAGATAAGACTCATTTTTCAACCTGCTC
          1 ATCTTCAATTCTTAGTCTACTTCCTTGCTACCTCAGGAAGATAAGACTCATTCTTCAACCTGCTC

                                *       
       1074 TCTTGCTACCTCAGAGAGATGAGGCTTA
         66 TCTTGCTACCTCAGAGAGATAAGGCTTA

       1102 AATCTGCTCC


Statistics
Matches: 225,  Mismatches: 42, Indels: 9
        0.82            0.15        0.03

Matches are distributed among these distances:
 176   94  0.42
 177   11  0.05
 178    1  0.00
 179    1  0.00
 180   70  0.31
 181   44  0.20
 182    4  0.02

ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33


Consensus pattern (177 bp):   
ATCTTCAATTCTTAGTCTACTTCCTTGCTACCTCAGGAAGATAAGACTCATTCTTCAACCTGCTC
TCTTGCTACCTCAGAGAGATAAGGCTTAGTGGTAAAAATCTGCTCCATCGCCAATACATGGAGAT
AAGATTCACCATTCGAAATCTACTCCGTTACACTTCAGGGAGATAAA
Done.