Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00772.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2547
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32


Found at i:1707 original size:17 final size:17

Alignment explanation


    Indices: 1685--1720  Score: 63
    Period size: 17  Copynumber: 2.1  Consensus size: 17

       1675 TTTTGGTTTG

                   *         
       1685 TTTTATCTAGTATGAAT
          1 TTTTATCGAGTATGAAT

                             
       1702 TTTTATCGAGTATGAAT
          1 TTTTATCGAGTATGAAT

              
       1719 TT
          1 TT

       1721 GATCAGTAAA


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  17   18  1.00

ACGTcount: A:0.28, C:0.06, G:0.14, T:0.53


Consensus pattern (17 bp):   
TTTTATCGAGTATGAAT
Done.