Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00799.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2432
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29


Found at i:21 original size:12 final size:12

Alignment explanation


    Indices: 4--42  Score: 51
    Period size: 12  Copynumber: 3.1  Consensus size: 12

          1 CCC

                  *     
          4 CCTTTCCCTCTT
          1 CCTTTCTCTCTT

                        
         16 CCTTTCTCTCTT
          1 CCTTTCTCTCTT

                          
         28 CTCTCTTCTCTCTT
          1 C-CT-TTCTCTCTT

             
         42 C
          1 C

         43 TCTCTTCTTC


Statistics
Matches: 24,  Mismatches: 1, Indels: 2
        0.89            0.04        0.07

Matches are distributed among these distances:
  12   12  0.50
  13    2  0.08
  14   10  0.42

ACGTcount: A:0.00, C:0.46, G:0.00, T:0.54


Consensus pattern (12 bp):   
CCTTTCTCTCTT

Found at i:29 original size:7 final size:7

Alignment explanation


    Indices: 11--50  Score: 66
    Period size: 7  Copynumber: 6.0  Consensus size: 7

          1 CCCCCTTTCC

                   
         11 CTCTTC-
          1 CTCTTCT

                   
         17 CT-TTCT
          1 CTCTTCT

                   
         23 CTCTTCT
          1 CTCTTCT

                   
         30 CTCTTCT
          1 CTCTTCT

                   
         37 CTCTTCT
          1 CTCTTCT

                   
         44 CTCTTCT
          1 CTCTTCT

         51 TCTCATATTT


Statistics
Matches: 32,  Mismatches: 0, Indels: 3
        0.91            0.00        0.09

Matches are distributed among these distances:
   5    3  0.09
   6    4  0.12
   7   25  0.78

ACGTcount: A:0.00, C:0.42, G:0.00, T:0.57


Consensus pattern (7 bp):   
CTCTTCT

Done.