Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00803.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 583

Length: 972
ACGTcount: A:0.32, C:0.13, G:0.14, T:0.42


Found at i:795 original size:16 final size:17

Alignment explanation


    Indices: 776--810  Score: 54
    Period size: 16  Copynumber: 2.1  Consensus size: 17

        766 ATTGTTACAG

                             
        776 ATGCAAATTTTT-TTAA
          1 ATGCAAATTTTTATTAA

                  *          
        792 ATGCAATTTTTTATTAA
          1 ATGCAAATTTTTATTAA

              
        809 AT
          1 AT

        811 TTGTATCTTT


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  16   11  0.65
  17    6  0.35

ACGTcount: A:0.37, C:0.06, G:0.06, T:0.51


Consensus pattern (17 bp):   
ATGCAAATTTTTATTAA

Done.