Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00824.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3452
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35


Found at i:1580 original size:59 final size:59

Alignment explanation


    Indices: 1512--1661  Score: 200
    Period size: 47  Copynumber: 2.7  Consensus size: 59

       1502 TGATAGTTAA

                                                                       
       1512 AAAAATTAAGAGTTGAGGGTTTGAGATGGACTACAATAATTTATATGGGTATGAAATAC
          1 AAAAATTAAGAGTTGAGGGTTTGAGATGGACTACAATAATTTATATGGGTATGAAATAC

                                                                       
       1571 AAAAATTAAGAGTTGAGGGTTT--GA--GA--AC----A--TATATGGGTATGAAATAC
          1 AAAAATTAAGAGTTGAGGGTTTGAGATGGACTACAATAATTTATATGGGTATGAAATAC

                                                         
       1618 AAAAATTAAGAGTTGAGGGTTTGAGATAGG-CTACAATAATTTAT
          1 AAAAATTAAGAGTTGAGGGTTTGAGAT-GGACTACAATAATTTAT

       1662 TAAGTTAAGC


Statistics
Matches: 78,  Mismatches: 0, Indels: 26
        0.75            0.00        0.25

Matches are distributed among these distances:
  47   40  0.51
  49    3  0.04
  52    1  0.01
  53    4  0.05
  55    2  0.03
  57    3  0.04
  59   25  0.32

ACGTcount: A:0.41, C:0.05, G:0.24, T:0.30


Consensus pattern (59 bp):   
AAAAATTAAGAGTTGAGGGTTTGAGATGGACTACAATAATTTATATGGGTATGAAATAC

Done.