Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00827.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5282
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.35


Found at i:1620 original size:25 final size:26

Alignment explanation


    Indices: 1570--1631  Score: 74
    Period size: 25  Copynumber: 2.4  Consensus size: 26

       1560 TTAGTGGCTC

                               *       
       1570 AAACGGTGT-GTTTTGGCTTTTTAGTT
          1 AAACGGT-TCGTTTTGGCTCTTTAGTT

               *                      
       1596 AAATGGTTCGTTTTGG-TCTTTAGTT
          1 AAACGGTTCGTTTTGGCTCTTTAGTT

             *         
       1621 ATACGGTTCGT
          1 AAACGGTTCGT

       1632 ATGGCTATAA


Statistics
Matches: 31,  Mismatches: 4, Indels: 3
        0.82            0.11        0.08

Matches are distributed among these distances:
  25   18  0.58
  26   13  0.42

ACGTcount: A:0.16, C:0.10, G:0.26, T:0.48


Consensus pattern (26 bp):   
AAACGGTTCGTTTTGGCTCTTTAGTT
Done.