Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01855.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2865
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.31


Found at i:444 original size:17 final size:17

Alignment explanation


    Indices: 414--446  Score: 50
    Period size: 17  Copynumber: 1.9  Consensus size: 17

        404 ATTGTTACCC

                             
        414 TTGTTGATGATGATGAT
          1 TTGTTGATGATGATGAT

                             
        431 TTGTGTGATG-TGATGA
          1 TTGT-TGATGATGATGA

        447 GGCAACGCCT


Statistics
Matches: 15,  Mismatches: 0, Indels: 2
        0.88            0.00        0.12

Matches are distributed among these distances:
  17   10  0.67
  18    5  0.33

ACGTcount: A:0.21, C:0.00, G:0.33, T:0.45


Consensus pattern (17 bp):   
TTGTTGATGATGATGAT
Done.