Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00834.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2294
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32


Found at i:1393 original size:39 final size:39

Alignment explanation


    Indices: 1349--1426  Score: 147
    Period size: 39  Copynumber: 2.0  Consensus size: 39

       1339 TTTAAGTCTC

                           *                       
       1349 TTTGTGTGGATTTCCTTAAATTGAATTGTATATGAGTGA
          1 TTTGTGTGGATTTCCGTAAATTGAATTGTATATGAGTGA

                                                   
       1388 TTTGTGTGGATTTCCGTAAATTGAATTGTATATGAGTGA
          1 TTTGTGTGGATTTCCGTAAATTGAATTGTATATGAGTGA

       1427 ACACTGAATG


Statistics
Matches: 38,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  39   38  1.00

ACGTcount: A:0.26, C:0.05, G:0.24, T:0.45


Consensus pattern (39 bp):   
TTTGTGTGGATTTCCGTAAATTGAATTGTATATGAGTGA
Done.