Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00835.P2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5626
ACGTcount: A:0.31, C:0.23, G:0.13, T:0.33


Found at i:4780 original size:71 final size:71

Alignment explanation


    Indices: 4667--4811  Score: 281
    Period size: 71  Copynumber: 2.0  Consensus size: 71

       4657 ATTTCAAATA

                                               *                             
       4667 TTTTTTTGCCTCATAGTCTCTTGTACATAGGCTCTTTAGTGCTTATGATAAAATCTTTTTACCAT
          1 TTTTTTTGCCTCATAGTCTCTTGTACATAGGCTCTCTAGTGCTTATGATAAAATCTTTTTACCAT

                  
       4732 TCTTAT
         66 TCTTAT

                                                                             
       4738 TTTTTTTGCCTCATAGTCTCTTGTACATAGGCTCTCTAGTGCTTATGATAAAATCTTTTTACCAT
          1 TTTTTTTGCCTCATAGTCTCTTGTACATAGGCTCTCTAGTGCTTATGATAAAATCTTTTTACCAT

                  
       4803 TCTTAT
         66 TCTTAT

               
       4809 TTT
          1 TTT

       4812 ATCCTTTTGA


Statistics
Matches: 73,  Mismatches: 1, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
  71   73  1.00

ACGTcount: A:0.21, C:0.19, G:0.11, T:0.50


Consensus pattern (71 bp):   
TTTTTTTGCCTCATAGTCTCTTGTACATAGGCTCTCTAGTGCTTATGATAAAATCTTTTTACCAT
TCTTAT
Done.