Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00857.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1904
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31


Found at i:434 original size:18 final size:19

Alignment explanation


    Indices: 399--434  Score: 56
    Period size: 18  Copynumber: 1.9  Consensus size: 19

        389 TTTCTTTTCA

                       *       
        399 TTGTAAATTAATGAAAAAC
          1 TTGTAAATTAAAGAAAAAC

                              
        418 TTGTAAA-TAAAGAAAAA
          1 TTGTAAATTAAAGAAAAA

        435 GCTAAAGTTT


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  18    9  0.56
  19    7  0.44

ACGTcount: A:0.58, C:0.03, G:0.11, T:0.28


Consensus pattern (19 bp):   
TTGTAAATTAAAGAAAAAC
Done.