Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00861.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4421
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.34


Found at i:301 original size:15 final size:16

Alignment explanation


    Indices: 270--301  Score: 57
    Period size: 16  Copynumber: 2.1  Consensus size: 16

        260 TTATTTATGC

                            
        270 ATGATAGTAATTGATT
          1 ATGATAGTAATTGATT

                            
        286 ATGATAGTAA-TGATT
          1 ATGATAGTAATTGATT

             
        301 A
          1 A

        302 GAATTATAAC


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  15    6  0.38
  16   10  0.62

ACGTcount: A:0.41, C:0.00, G:0.19, T:0.41


Consensus pattern (16 bp):   
ATGATAGTAATTGATT
Done.