Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00865.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5315
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.29


Found at i:2894 original size:15 final size:15

Alignment explanation


    Indices: 2874--2913  Score: 52
    Period size: 13  Copynumber: 2.9  Consensus size: 15

       2864 CTTAAAAAAT

                           
       2874 TTGATTAATATAATA
          1 TTGATTAATATAATA

                           
       2889 TTGATT-AT-TAA-A
          1 TTGATTAATATAATA

                          
       2901 -TGATTAATATAAT
          1 TTGATTAATATAAT

       2914 TAGCCAATTA


Statistics
Matches: 22,  Mismatches: 0, Indels: 7
        0.76            0.00        0.24

Matches are distributed among these distances:
  11    5  0.23
  12    3  0.14
  13    6  0.27
  14    2  0.09
  15    6  0.27

ACGTcount: A:0.45, C:0.00, G:0.07, T:0.47


Consensus pattern (15 bp):   
TTGATTAATATAATA
Done.