Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00871.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 388

Length: 648
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34


Found at i:440 original size:3 final size:3

Alignment explanation


    Indices: 432--465  Score: 68
    Period size: 3  Copynumber: 11.3  Consensus size: 3

        422 AGCAACTGCA

                                                         
        432 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT G
          1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT G

        466 GAGCTCCAAC


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   31  1.00

ACGTcount: A:0.32, C:0.00, G:0.35, T:0.32


Consensus pattern (3 bp):   
GAT

Done.