Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00875.N34

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1933
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34


Found at i:740 original size:168 final size:169

Alignment explanation


    Indices: 429--796  Score: 521
    Period size: 168  Copynumber: 2.2  Consensus size: 169

        419 TGGTCTTGAA

                    *                                        *               
        429 TGATTTTAAGAAACACG-TTTGTTTAAATTAAGACTTCAATTTTACAGCTTGATAAATTAGACTT
          1 TGATTTTAGGAAACA-GATTTGTTTAAATTAAGACTTCAATTTTACAGCATGATAAATTAGACTT

                                                          *                  
        493 TGTGATAACATGCAATTTGAATGCTTTCTTGTCCTTGATTTATATGGTTTTCCAATCACACAAAA
         65 TGTGATAACATGCAA-TTGAATGCTTTCTTGTCCTTGATTTATATGATTTTCCAATCACACAAAA

                                                      
        558 GAATATAAGTAAATAGTAATGAAACCTTGGGTCTT-AAATTT
        129 GAATATAAGTAAATAGTAATGAAACCTT-GGTCTTAAAATTT

                 *                                                       *   
        599 TGATTCTAGGAAACAGATTTGTTTAAA-TAAGACTTCAATTTTACAGCATGATAAATTAGATTTT
          1 TGATTTTAGGAAACAGATTTGTTTAAATTAAGACTTCAATTTTACAGCATGATAAATTAGACTTT

                 *    *                        *                   **     ** 
        663 GTGATGACATTCACA-TGAATGCTTTCTTGTCCTTTATTTATATGATTTTCCAATTTCACAATGG
         66 GTGATAACATGCA-ATTGAATGCTTTCTTGTCCTTGATTTATATGATTTTCCAATCACACAAAAG

                  *                                 
        727 AATATACGTAAATAGTAATGAAACCTTGGTCTTAAAATTT
        130 AATATAAGTAAATAGTAATGAAACCTTGGTCTTAAAATTT

                          *      *         
        767 T-ATTTTAGGAAACTGATTTGCTTAAGATTA
          1 TGATTTTAGGAAACAGATTTGTTTAA-ATTA

        797 TATCTTGATA


Statistics
Matches: 177,  Mismatches: 16, Indels: 11
        0.87            0.08        0.05

Matches are distributed among these distances:
 167   27  0.15
 168   77  0.44
 169   49  0.28
 170   24  0.14

ACGTcount: A:0.34, C:0.12, G:0.14, T:0.40


Consensus pattern (169 bp):   
TGATTTTAGGAAACAGATTTGTTTAAATTAAGACTTCAATTTTACAGCATGATAAATTAGACTTT
GTGATAACATGCAATTGAATGCTTTCTTGTCCTTGATTTATATGATTTTCCAATCACACAAAAGA
ATATAAGTAAATAGTAATGAAACCTTGGTCTTAAAATTT
Done.