Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00893.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 583

Length: 973
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.29


Found at i:117 original size:7 final size:7

Alignment explanation


    Indices: 105--133  Score: 58
    Period size: 7  Copynumber: 4.1  Consensus size: 7

         95 CAATATAAAG

                   
        105 AGAAAAA
          1 AGAAAAA

                   
        112 AGAAAAA
          1 AGAAAAA

                   
        119 AGAAAAA
          1 AGAAAAA

                   
        126 AGAAAAA
          1 AGAAAAA

             
        133 A
          1 A

        134 ACCCTTGAAA


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   22  1.00

ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00


Consensus pattern (7 bp):   
AGAAAAA

Done.