Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00910.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2503
ACGTcount: A:0.32, C:0.17, G:0.15, T:0.35


Found at i:2393 original size:12 final size:12

Alignment explanation


    Indices: 2376--2400  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

       2366 TAACATGTGA

                        
       2376 CACCCCTAAAAT
          1 CACCCCTAAAAT

                        
       2388 CACCCCTAAAAT
          1 CACCCCTAAAAT

             
       2400 C
          1 C

       2401 TATATATTAT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.40, C:0.44, G:0.00, T:0.16


Consensus pattern (12 bp):   
CACCCCTAAAAT
Done.