Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00911.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 262

Length: 437
ACGTcount: A:0.24, C:0.15, G:0.30, T:0.32


Found at i:16 original size:2 final size:2

Alignment explanation


    Indices: 10--57  Score: 87
    Period size: 2  Copynumber: 24.0  Consensus size: 2

          1 GTAGCATTT

                                 *                                        
         10 GA GA GA GA GA GA GA AA GA GA GA GA GA GA GA GA GA GA GA GA GA
          1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA

                    
         52 GA GA GA
          1 GA GA GA

         58 ATTCTCTCTG


Statistics
Matches: 44,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   2   44  1.00

ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00


Consensus pattern (2 bp):   
GA

Done.