Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga08g00922.F2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3463
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Found at i:2141 original size:145 final size:146
Alignment explanation
Indices: 1869--2150 Score: 410
Period size: 145 Copynumber: 1.9 Consensus size: 146
1859 TAAACATAGA
* *
1869 AACTTATCTGAGAATTGAAAATTTCTTGGATATTGAACTTAAGTGTTGCTGGCTAGCTGCTCAAA
1 AACTTATCTGAGAATTGAAAATTTCTTGGATATTGAACTTAAGTCTTGCTGGCTAGCTGATCAAA
* * *
1934 CTTAACTGTTAAGTTTGAAATTTACATTCAAGGAGCTAAGGACGTTTGAAAGATATGGATTTT-A
66 CTTAACTGTTAAGTTTGAAATTTACATTCAAGGAGCTAAGGACATATGAAAGATATGAATTTTCA
1998 TATTCATAGAATATGG
131 TATTCATAGAATATGG
2014 AACTTATCTGAGAATTGAAAATTTCTTGGATATTGAACTTAAAAGTCTTG-TGGCTAGCTGATCA
1 AACTTATCTGAGAATTGAAAATTTCTTGGATATTGAACTT--AAGTCTTGCTGGCTAGCTGATCA
* * * * *
2078 AACTTCACTGTTAAGTTTG-AGTTTACGTTCAAGGAGCTATGGACATATGAGAA-ATGTGAATTT
64 AACTTAACTGTTAAGTTTGAAATTTACATTCAAGGAGCTAAGGACATATGA-AAGATATGAATTT
*
2141 TCTTATTCAT
128 TCATATTCAT
2151 GTAATGAGAA
Statistics
Matches: 122, Mismatches: 11, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
145 75 0.61
146 40 0.33
147 7 0.06
ACGTcount: A:0.32, C:0.12, G:0.20, T:0.37
Consensus pattern (146 bp):
AACTTATCTGAGAATTGAAAATTTCTTGGATATTGAACTTAAGTCTTGCTGGCTAGCTGATCAAA
CTTAACTGTTAAGTTTGAAATTTACATTCAAGGAGCTAAGGACATATGAAAGATATGAATTTTCA
TATTCATAGAATATGG
Done.