Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00939.P2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2471
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29


Found at i:2243 original size:21 final size:21

Alignment explanation


    Indices: 2210--2260  Score: 66
    Period size: 21  Copynumber: 2.4  Consensus size: 21

       2200 ACAACTTAGA

                             *   
       2210 GCAGAGGCAGCAGAGAGGGAG
          1 GCAGAGGCAGCAGAGAGAGAG

                *   *    *       
       2231 GCAGCGGCTGCAGCGAGAGAG
          1 GCAGAGGCAGCAGAGAGAGAG

                     
       2252 GCAGAGGCA
          1 GCAGAGGCA

       2261 CGAGCGATGG


Statistics
Matches: 24,  Mismatches: 6, Indels: 0
        0.80            0.20        0.00

Matches are distributed among these distances:
  21   24  1.00

ACGTcount: A:0.29, C:0.20, G:0.49, T:0.02


Consensus pattern (21 bp):   
GCAGAGGCAGCAGAGAGAGAG
Done.