Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00950.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6673
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33


Found at i:2174 original size:22 final size:23

Alignment explanation


    Indices: 2153--2204  Score: 54
    Period size: 23  Copynumber: 2.3  Consensus size: 23

       2143 TAGACATTAT

                  *                 
       2153 TTTTTTGAAT-TATT-TTAATTAT
          1 TTTTTTCAATATATTGTT-ATTAT

                               *    
       2175 TATTTTTCAATATATTGTTTTTAT
          1 T-TTTTTCAATATATTGTTATTAT

                  
       2199 TTTTTT
          1 TTTTTT

       2205 ACTTATATTA


Statistics
Matches: 25,  Mismatches: 2, Indels: 5
        0.78            0.06        0.16

Matches are distributed among these distances:
  22    1  0.04
  23   13  0.52
  24    9  0.36
  25    2  0.08

ACGTcount: A:0.23, C:0.02, G:0.04, T:0.71


Consensus pattern (23 bp):   
TTTTTTCAATATATTGTTATTAT
Done.