Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00958.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 814

Length: 1357
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.27


Found at i:1170 original size:3 final size:3

Alignment explanation


    Indices: 1162--1214  Score: 88
    Period size: 3  Copynumber: 17.7  Consensus size: 3

       1152 ATCTATCAAG

                                                                  *       *
       1162 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGG TGA TGG
          1 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA

                  
       1210 TGA TG
          1 TGA TG

       1215 GTCTTGAGGA


Statistics
Matches: 46,  Mismatches: 4, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
   3   46  1.00

ACGTcount: A:0.28, C:0.00, G:0.38, T:0.34


Consensus pattern (3 bp):   
TGA

Done.