Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga08g00965.N2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 499
Length: 833
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.35
Found at i:305 original size:181 final size:181
Alignment explanation
Indices: 1--346 Score: 692
Period size: 181 Copynumber: 1.9 Consensus size: 181
1 GATGAAAGTTTCCCTATCAGTATGCATGATCTTGTGTCTTACTTCCATTGTGCATGCCGATCAGG
1 GATGAAAGTTTCCCTATCAGTATGCATGATCTTGTGTCTTACTTCCATTGTGCATGCCGATCAGG
66 GGAAGGCTGTTTTCTTTGAACCTCCTTATACTCCCTCGGCGTGCTATGGTACACAAAGCTATGGA
66 GGAAGGCTGTTTTCTTTGAACCTCCTTATACTCCCTCGGCGTGCTATGGTACACAAAGCTATGGA
131 AATATGGTGGCGGGAGTTAGTGATACGTTGTGGAAGATATATTGGGATTGA
131 AATATGGTGGCGGGAGTTAGTGATACGTTGTGGAAGATATATTGGGATTGA
182 GATGAAAGTTTCCCTATCAGTATGCATGATCTTGTGTCTTACTTCCATTGTGCATGCCGATCAGG
1 GATGAAAGTTTCCCTATCAGTATGCATGATCTTGTGTCTTACTTCCATTGTGCATGCCGATCAGG
247 GGAAGGCTGTTTTCTTTGAACCTCCTTATACTCCCTCGGCGTGCTATGGTACACAAAGCTATGGA
66 GGAAGGCTGTTTTCTTTGAACCTCCTTATACTCCCTCGGCGTGCTATGGTACACAAAGCTATGGA
312 AATATGGTGGCGGGAGTTAGTGATACGTTGTGGAA
131 AATATGGTGGCGGGAGTTAGTGATACGTTGTGGAA
347 CAATGGAAGA
Statistics
Matches: 165, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
181 165 1.00
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.32
Consensus pattern (181 bp):
GATGAAAGTTTCCCTATCAGTATGCATGATCTTGTGTCTTACTTCCATTGTGCATGCCGATCAGG
GGAAGGCTGTTTTCTTTGAACCTCCTTATACTCCCTCGGCGTGCTATGGTACACAAAGCTATGGA
AATATGGTGGCGGGAGTTAGTGATACGTTGTGGAAGATATATTGGGATTGA
Done.