Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00969.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1957
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30


Found at i:1343 original size:19 final size:19

Alignment explanation


    Indices: 1319--1355  Score: 74
    Period size: 19  Copynumber: 1.9  Consensus size: 19

       1309 ATTCTTTTCA

                               
       1319 TTGGTGTGTTTAGTAGAAC
          1 TTGGTGTGTTTAGTAGAAC

                              
       1338 TTGGTGTGTTTAGTAGAA
          1 TTGGTGTGTTTAGTAGAA

       1356 ATGATGGAAA


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   18  1.00

ACGTcount: A:0.22, C:0.03, G:0.32, T:0.43


Consensus pattern (19 bp):   
TTGGTGTGTTTAGTAGAAC
Done.