Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00971.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2900
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.30


Found at i:2120 original size:63 final size:63

Alignment explanation


    Indices: 2021--2146  Score: 207
    Period size: 63  Copynumber: 2.0  Consensus size: 63

       2011 CTGTCTGCTG

                                                      *        *           
       2021 GCACTGACATTGAACTAGAAGAAAAAATGGATAATTTGTCTCTTGAAGAGCGTAGCAAAACTA
          1 GCACTGACATTGAACTAGAAGAAAAAATGGATAATTTGTCTCCTGAAGAGCATAGCAAAACTA

                   *     **                                                
       2084 GCACTGATATTGAGGTAGAAGAAAAAATGGATAATTTGTCTCCTGAAGAGCATAGCAAAACTA
          1 GCACTGACATTGAACTAGAAGAAAAAATGGATAATTTGTCTCCTGAAGAGCATAGCAAAACTA

       2147 TGGTAGAAAG


Statistics
Matches: 58,  Mismatches: 5, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  63   58  1.00

ACGTcount: A:0.41, C:0.13, G:0.21, T:0.24


Consensus pattern (63 bp):   
GCACTGACATTGAACTAGAAGAAAAAATGGATAATTTGTCTCCTGAAGAGCATAGCAAAACTA

Found at i:2782 original size:10 final size:9

Alignment explanation


    Indices: 2762--2787  Score: 52
    Period size: 9  Copynumber: 2.9  Consensus size: 9

       2752 AGGGTTTTTA

                     
       2762 TTTTTTATT
          1 TTTTTTATT

                     
       2771 TTTTTTATT
          1 TTTTTTATT

                    
       2780 TTTTTTAT
          1 TTTTTTAT

       2788 GGTGGTTACT


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   17  1.00

ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88


Consensus pattern (9 bp):   
TTTTTTATT
Done.