Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00973.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3447
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.34


Found at i:173 original size:6 final size:6

Alignment explanation


    Indices: 162--192  Score: 62
    Period size: 6  Copynumber: 5.2  Consensus size: 6

        152 ACATTCCTCC

                                                
        162 CCCCTT CCCCTT CCCCTT CCCCTT CCCCTT C
          1 CCCCTT CCCCTT CCCCTT CCCCTT CCCCTT C

        193 TTTCCTCGAA


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   25  1.00

ACGTcount: A:0.00, C:0.68, G:0.00, T:0.32


Consensus pattern (6 bp):   
CCCCTT

Done.