Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00974.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5189
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33


Found at i:4930 original size:13 final size:13

Alignment explanation


    Indices: 4887--4931  Score: 54
    Period size: 13  Copynumber: 3.3  Consensus size: 13

       4877 GCCAAACAAC

                *        
       4887 AAAATGAAGAGAG
          1 AAAAAGAAGAGAG

                       *   
       4900 AAAAAGAATTGGGAG
          1 AAAAAGAA--GAGAG

                         
       4915 AAAAAGAAGAGAG
          1 AAAAAGAAGAGAG

                
       4928 AAAA
          1 AAAA

       4932 TGGAGTATTC


Statistics
Matches: 27,  Mismatches: 3, Indels: 4
        0.79            0.09        0.12

Matches are distributed among these distances:
  13   15  0.56
  15   12  0.44

ACGTcount: A:0.64, C:0.00, G:0.29, T:0.07


Consensus pattern (13 bp):   
AAAAAGAAGAGAG
Done.