Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00976.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4683
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.26


Found at i:4444 original size:2 final size:2

Alignment explanation


    Indices: 4437--4490  Score: 92
    Period size: 2  Copynumber: 27.0  Consensus size: 2

       4427 GCCAAATCTT

                                                                          
       4437 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
          1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA

                              
       4479 GA -A GA GTA GA GA
          1 GA GA GA G-A GA GA

       4491 ATCAGCCAAA


Statistics
Matches: 50,  Mismatches: 0, Indels: 4
        0.93            0.00        0.07

Matches are distributed among these distances:
   1    1  0.02
   2   47  0.94
   3    2  0.04

ACGTcount: A:0.50, C:0.00, G:0.48, T:0.02


Consensus pattern (2 bp):   
GA

Done.